SNP Profiles matching PA 150

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
1._EET_272_[ECU]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
2._GC-03-032-3-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
3._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
4._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
5._PA_150_[PER]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
6._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
7._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
8._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
9._GC-01-034-2-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
10._EET_272_[ECU]	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
11._GC-03-032-3-11	CT	GG	GG	CC	TT	AC	CT	TT	CC	CC	AA	AG	CC	AG
12._RUQ_1436	_	GG	GG	CC	_	_	_	TT	_	_	_	_	CC	AG
13._EQX_/O_[CHA]	CC	GG	GG	CC	TT	AC	CC	TT	CC	CC	AA	AG	CC	_
14._GC-07-077-4-21	CC	GG	GG	CC	TT	AC	CC	TT	CC	CC	AA	AG	CC	_
15._RUQ_1569	_	AG	CG	CC	_	_	_	TT	_	_	_	_	CC	AG
16._RUQ_32	_	GG	CG	CT	_	_	_	TT	_	_	_	_	CC	AG
17._RUQ_1564	_	AG	CG	CC	_	_	_	TT	_	_	_	_	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
1._EET_272_[ECU]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
2._GC-03-032-3-11	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
3._PA_150_[PER]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
4._PA_150_[PER]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
5._PA_150_[PER]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
6._GC-01-034-2-11	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
7._GC-01-034-2-11	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
8._GC-01-034-2-11	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
9._GC-01-034-2-11	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
10._EET_272_[ECU]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
11._GC-03-032-3-11	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
12._RUQ_1436	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CC	AC
13._EQX_/O_[CHA]	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
14._GC-07-077-4-21	CT	AA	CC	CT	CC	GG	GG	AG	TT	CC	CG	GT	CC	AC
15._RUQ_1569	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CT	AC
16._RUQ_32	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CT	AC
17._RUQ_1564	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
1._EET_272_[ECU]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
2._GC-03-032-3-11	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
3._PA_150_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
4._PA_150_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
5._PA_150_[PER]	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
6._GC-01-034-2-11	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
7._GC-01-034-2-11	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
8._GC-01-034-2-11	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
9._GC-01-034-2-11	AA	GG	AA	CC	AG	CC	AA	CC	GG	CC	AT	GG	X_X	X_X
10._EET_272_[ECU]	AA	GG	AA	CC	AG	CC	_	CC	GG	CC	AT	GG	X_X	X_X
11._GC-03-032-3-11	AA	GG	AA	CC	AG	CC	_	CC	GG	CC	AT	GG	X_X	X_X
12._RUQ_1436	AA	_	AA	CC	AG	CC	AC	CC	GG	CC	_	_	X_X	X_X
13._EQX_/O_[CHA]	AA	GG	AA	CC	AG	CC	CC	CC	GG	CC	AT	GG	X_X	X_X
14._GC-07-077-4-21	AA	GG	AA	CC	AG	CC	CC	CC	GG	CC	AT	GG	X_X	X_X
15._RUQ_1569	AA	_	AA	CC	AG	CC	AA	CC	GG	AC	_	_	X_X	X_X
16._RUQ_32	AA	_	AA	CC	AG	CC	AC	CC	GG	CC	_	_	X_X	X_X
17._RUQ_1564	AA	_	AA	CC	AG	CC	AA	CC	GG	AC	_	_	X_X	X_X

Input profile: PA_150_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 1209 3

Dapeng Zhang, 2016

1._EET_272_[ECU]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3311 8

Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

3._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 7 > FP

Dapeng Zhang, 2016

4._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 10

Dapeng Zhang, 2016

5._PA_150_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1209 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP4

9._PA_150_[PER] GC-01-034-2-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

10._EET_272_[ECU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3311 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._EET_272_[ECU] GC-03-032-3-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

12._MOQ_6_/95 RUQ_1436

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._EQX_/O_[CHA]

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7421 2

Dapeng Zhang, 2016

14._EQX_/O_[CHA] GC-07-077-4-21

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

15._CRUZ_7_/14 RUQ_1569

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

17._PA_71_[PER] RUQ_1564

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25